ZEISS ZEN core is a universal microscopy software suite designed to provide integrated control, image acquisition, analysis, and data management for ZEISS light and electron microscopes. It supports a wide range of microscopy workflows, from routine imaging to advanced, automated, and multi-modal experiments. ZEN core enables seamless operation of various microscope types—including compound, stereo, and scanning electron microscopes (SEMs)—through a unified graphical user interface. The software offers advanced features such as machine learning-based image segmentation, automated panorama and tile imaging, high dynamic range (HDR) acquisition, and enhanced depth of field. It includes dedicated modules for metallographic analysis, phase and particle analysis, and supports both manual and automated workflows. ZEN core facilitates data sharing and connectivity across laboratories and locations, with centralized data storage and user management. The suite is suitable for both industrial and academic environments, supporting quality assurance, materials research, and life sciences applications.

Key Features

Integrated Microscope Control Unified operation of ZEISS light and electron microscopes.

• Supports compound, stereo, SEM, and FIB-SEM instruments.
• Streamlined navigation and instrument setup for all user levels.

Automated Image Acquisition Efficient and repeatable imaging workflows.

• Panorama and tile imaging, autofocus, HDR, and enhanced depth of field (EDF).
• Automated and manual acquisition modes for diverse sample types.

Advanced Image Analysis Comprehensive analysis tools for materials and life sciences.

• Machine learning-based segmentation, phase, and particle analysis.
• Metallographic modules for grain size, layer thickness, and inclusion classification.

Data Management and Connectivity Centralized data storage and sharing across locations.

• Data archive for images, documents, and templates.
• User management and reporting templates for standardized workflows.

Multi-Modal and Correlative Workflows Combines data from different microscopy modalities.

• Correlation of light and electron microscopy data.
• Supports multi-modal experiments and integrated EDS analysis for SEMs.

Benefits

Efficiency and Automation Accelerates routine and complex microscopy tasks.

• Reduces manual intervention with automated workflows.
• Increases throughput and repeatability in industrial and research settings.

Flexibility and Scalability Adapts to various instruments and laboratory needs.

• Modular design supports a wide range of applications and user expertise.
• Scalable from entry-level to fully automated systems.

Data Integrity and Collaboration Ensures reliable data management and sharing.

• Centralized storage and user management for secure, accessible data.
• Facilitates collaboration across teams and locations.